Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs516580 chr11:62492124 C/G 4.67E-8 134 43.6 42.27 20.6 KM Plot
TGCT rs519880 chr13:21841544 T/C 5.93E-7 132 46.3 36.7 14.42 KM Plot
TGCT rs519882 chr13:21841540 T/C 5.93E-7 132 46.3 36.7 14.42 KM Plot
TGCT rs529794 chr13:21848406 T/C 0 128 46.3 37.3 0.57 KM Plot
TGCT rs536209 chr13:21847714 C/T 6.44E-7 132 46.3 35.73 14.42 KM Plot
TGCT rs543055 chr3:172411320 C/G 0.000108 130 45.1 37.7 25.57 KM Plot
TGCT rs546079 chr3:172406412 T/C 1.43E-6 133 45.1 37.62 21.45 KM Plot
TGCT rs550804 chr17:39328697 A/G 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs55748686 chr7:127148595 T/C 1.49E-5 134 42.1 37.53 100.87 KM Plot
TGCT rs55770293 chr10:27558240 T/A 6.98E-7 132 42.18 46.3 20.6 KM Plot
TGCT rs558553 chr2:239346196 C/T 0.000157 134 113.35 45.83 37.7 KM Plot
TGCT rs55902612 chr10:27558312 GA/G 6.98E-7 132 42.18 46.3 20.6 KM Plot
TGCT rs55916179 chr16:27808865 C/T 1.15E-5 132 46.3 33.55 17.27 KM Plot
TGCT rs55921267 chr7:127148361 A/T 1.49E-5 134 42.1 37.53 100.87 KM Plot
TGCT rs55924236 chr5:177001904 G/T 4.97E-5 130 50.97 38.6 1.4 KM Plot